Waters Breakfast Workshop 

Introduction to microfluidics coupled with mass spectrometry for quantitation of low level circulating peptide Biomarkers : Tips and tricks

Presented by: Dr Jose Castro-Perez, Waters Corp USA
Date: Saturday 4 February 2017
Time: 7.15am - 8.45am
Location: Heritage Ballroom, Mantra Lorne 
Breakfast: from 7.00am

• Cell-type specific profiling of specialized trichomes from the salt-tolerant plant Mesembryanthemum crystallinum reveals insight into their development and role in plant salt tolerance.   - Bronwyn J. Barkla
• Protein correlation profiling and the dynamics of the Saccharomyces cerevisiae intracellular methylation network - Gene Hart-Smith
• Substrates and and kinetics of Arg-GlcNAcylation by the NleB/SseK family of bacterial type III secretion sytem (T3SS) effectors - Nichollas E Scott
• Quantitative shift in MHC epitope abundance during the two major pathways of antigen presentation following virus infection: implications for the induction of antiviral immunity - Nathan P Croft

• Ultraviolet photodissociation and ion-electron reactivity of extremely supercharged protein ions  - W. Alexander Donald
• Biomedical applications of SONAR - a novel data independent acquisition method for quantitative and qualitative analyses - Arthur Moseley
• MS1 based quantification optimization on DIA methods on  a quadrupole-Orbitrap mass spectrometer - Yue Xuan
• Proteome-wide drug dose-response of prostate cancer cell lines exposed to androgen receptor antagonists by microflow-LC SWATH MS analysis - Christie Hunter
• Mapping the Liver Interactome - Mark Larance

• Investigating protein-protein interactions by crosslinking mass spectrometry - Daniela-Lee Smith
• Dissecting the subcellular secretory glycoproteome - Lucia F Zacchi
• Using proteomic analysis to uncover the mechanisms of non-protein amino acids attributed to neurological diseases - Joel Steele
• Variable selection and biological characterisation of chronic wounds using wound fluid proteomics and mass spectrometry - Daniel A Broszczak
• How low can you go? The relationship between sample loading and protein quantification in SWATH-MS - Madeleine J Otway

• Characterising T helper cell epitopes from the envelope protein of HIV   - Sri H Ramarathinam
• Identification of the dominant endogenous factors regulating inflammation and regeneration in skeletal muscle following physical trauma - Lian Liu
• MALDI Mass Spectrometry Imaging Reveals Different Proteomics Patterns between Vulvar Cancer With and Without Lymph Node Metastasis - Chao Zhang
• The Glaucomic eye: A window into the molecular basis of Alzheimer’s disease  - Mehdi Mirzaei
• Multi-omics approach to understand how Pseudomonas aeruginosa adapts to the cystic fibrosis lung - Karthik Shantharam Kamath
• Using an integrative multi-omics approach for the identification of novel quantitative biomarkers for artemisinin resistance in Plasmodium falciparum parasites - Ghizal Siddiqui
• Predicting Motif Mimicry in Viruses using Protein-Protein Interaction Data - Sobia Idrees
• Comparative analysis of acute and chronic phenotypes of the Pseudomonas aeruginosa Australian Epidemic Strain AES-1 in a Cystic Fibrosis lung infection model - William Klare
• Unravelling the proteomic profile of rice mitosis under drought stress - Yunqi Wu
• Proteomic study of beta-catenin protein interactions in colon cancer - Crystal Semaan
•  Quantitative Proteomics to Explore the Thiol Proteome of Duchenne Muscular Dystrophy - Marisa Duong
• Exploring the consequences of genetic variation and associated proteomes in chronic venous leg ulcers - Elizabeth Sydes
• Characterising the role of protein kinase CK2 in regulating aluminium toxicity in yeast - Filip Veljanoski
• Effect of Serum Concentration on the Proteome of Rat Bone Marrow-Derived Mesenchymal Stem Cells - Morgan Carlton
• SWATH-MS proteome profiling of copper-stressed Pseudomonas aeruginosa PAO1 provides leads for functional characterization - Bradley W Wright
• Proteomics of Caco-2 human intestinal epithelial cell response to Campylobacter jejuni infection - Zeynep Sumer-Bayraktar
• Analysis of proteoforms in membrane protein complexes by top-down proteomics - Lucy Woods
• A Repository of Proteomics Software Tools - Eugene A Kapp
• Extracting more from large assay libraries using Gas Phase Fractionation SWATH-MS - Christoph Krisp
• Optimisation of a tissue lysis and digestion protocol using pressure cycling technology (PCT) - Natasha Care
• Lipidomics Quantitation Using a Novel Scanning Quadrupole DIA Method - Heather Patsiouras
• Quantitation of Proteomics Samples Using a Novel Scanning Quadrupole DIA Method - Mark A Ritchie
• A rapid and selective quan/qual characterization of a novel DIA method for proteomics analysis and its application to biomedical research - Jose Castro-Perez
• Lymph node metastasis of primary endometrial cancers: Associated proteins revealed by MALDI imaging - Parul Mittal
• Spatially-resolved metabolite quantification in the aging human lens - Angus C Grey
• Improved reproducibility in MALDI imaging using a scanning laser beam - Lucy Woods
• Boosting compound identification confidence by exploiting all HRAM spectral information: Integrating accurate mass, true isotopic pattern, in-source fragmentation, MS/MS fragmentation, and retention time - Lucy Woods
• Unpicking the Unique Neutrophil Glycobiology in Cancer, Inflammation and Infection using Glycoanalytics - Morten Thaysen-Andersen

• Combining metabolomics and genomics to dissect rice quality, and provide robust and trait-relevant tools to rice breeders. - Melissa Fitzgerald
• MS-guided plant breeding - Michelle Colgrave
• Towards the complete PTM map of CSLF6 - Kris Ford
• Next generation proteomics to detect biomarkers of pain and inflammation. - Priya Ghodasara

• Developmental proteomics: unravelling age specific differences in the human proteome - Vera Ignjatovic
• Coupling of gene-editing and proteomics to dissect the assembly and function of human mitochondrial complex I - David A Stroud
• Quantification of the exercise-regulated peptidome and the chemical modification of bioactive peptides - Benjamin Parker
• Application of metabolomics and proteomics for biomarker discovery and development of therapies for the transmissible cancer, Tasmanian Devil Facial Tumour Disease  - Richard Wilson
• Proteome analysis of endometriosis patient tissues leads to development of screening assays in sera - Garry Corthals
• Towards Personalised Medicine: The Road Ahead   - Ed Nice

SoAPS Speakers Meet & Greet

Date: Saturday 4 February 2017
Time: 7.15pm - 8.30pm
Location: Seagrass Lawn, Mantra Lorne
Food: Canapes
Cost: (Ticketed Event)

APS Trivia Night

Date: Saturday 4 February 2017
Time: 7.30pm - 10.30pm
Location: Seagrass Lawn, Mantra Lorne
Food: Otway Carvery
Cost: (Ticketed event)